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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
68
DNase-seq
64
single cell RNA-seq
49
total RNA-seq
27
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
RNA microarray
1
Hi-C
Assay category
149
DNA accessibility
113
Transcription
27
DNA binding
1
3D chromatin structure
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
6
control
1
RNA binding protein
1
transcription factor
Date released
128
August, 2021
68
June, 2019
47
September, 2023
23
April, 2019
14
May, 2023
8
February, 2021
July, 2019
4
October, 2019
3
December, 2019
Available data
152
bed narrowPeak
95
bam
88
bigWig
86
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
62
txt
10
tsv
5
csv
1
hic
Organism
295
Homo sapiens
Biosample type
295
tissue
29
primary cell
19
cell line
Organ
537
connective tissue
499
pancreas
478
adipose tissue
353
liver
295
kidney
293
heart
254
brain
158
bone element
126
blood vessel
126
vasculature
117
limb
75
musculature of body
72
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
248
AMP
47
KPMP
Genome assembly (visualization)
163
GRCh38
88
hg19
Lab
142
Katalin Susztak, Upenn
106
AMP-T2D consortium
47
KPMP
Audit category:
7
audit script error
organ_slims!
mammary gland
month_released!
July, 2019
BIOSAMPLE
ASSAY
295 results
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ATAC-seq
DNase-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
RNA microarray
Hi-C
tissue
kidney
75
13
64
49
27
6
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
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