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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
458
total RNA-seq
ChIP-seq
83
DNase-seq
81
ATAC-seq
64
single cell RNA-seq
6
WGBS
6
snATAC-seq
4
RRBS
4
pCHi-C
4
small RNA-seq
3
RNA microarray
3
snDrop-seq
2
STARR-seq
1
FAIRE-seq
1
Hi-C
Assay category
526
Transcription
171
DNA accessibility
10
DNA methylation
1
3D chromatin structure
Date released
394
February, 2021
131
August, 2021
79
June, 2019
47
September, 2023
23
July, 2019
15
May, 2023
10
October, 2019
7
August, 2017
3
December, 2019
3
March, 2020
2
February, 2020
1
August, 2018
1
February, 2023
1
January, 2018
1
November, 2018
1
November, 2019
1
October, 2017
Available data
498
bigWig
497
bam
425
tsv
150
bed narrowPeak
84
bigBed narrowPeak
80
bed bed3+
80
bed broadPeak
80
bigBed broadPeak
64
xls
62
txt
7
fastq
6
bed bedMethyl
6
bigBed bedMethyl
5
csv
1
bedpe bed3+
1
hic
Organism
719
Homo sapiens
Biosample type
687
tissue
23
primary cell
9
cell line
1
in vitro differentiated cells
Organ
728
pancreas
531
connective tissue
418
adipose tissue
395
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
673
AMP
47
KPMP
Genome assembly (visualization)
572
GRCh38
497
hg19
Lab
529
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
2
Bing Ren, UCSD
Audit category:
8
inconsistent ontology term
7
audit script error
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
720 results
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total RNA-seq
DNase-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
RRBS
pCHi-C
small RNA-seq
RNA microarray
snDrop-seq
STARR-seq
FAIRE-seq
Hi-C
tissue
adipose tissue
382
3
3
1
kidney
49
13
75
64
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
+ See 16 more…
primary cell
kidney tubule cell
1
3
epithelial cell of proximal tubule
1
1
1
kidney epithelial cell
1
1
1
kidney glomerular epithelial cell
1
2
renal cortical epithelial cell
1
1
1
+ See 4 more…
cell line
HEK293T
2
RCC 7860 vector
1
1
glomerular visceral epithelial cell
1
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
+ See 1 more…
in vitro differentiated cells
white fat cell
1
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