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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
97
ChIP-seq
76
ATAC-seq
DNase-seq
64
single cell RNA-seq
54
total RNA-seq
6
snATAC-seq
3
snDrop-seq
2
RNA microarray
2
STARR-seq
2
pCHi-C
1
FAIRE-seq
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
119
Transcription
97
DNA binding
83
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
59
transcription factor
21
histone
21
histone modification
15
control
11
RNA binding protein
11
narrow histone mark
10
broad histone mark
10
chromatin remodeller
7
recombinant protein
Date released
130
August, 2021
47
September, 2023
27
December, 2018
23
April, 2019
18
January, 2019
18
October, 2019
15
November, 2018
14
May, 2023
8
February, 2021
4
July, 2019
3
December, 2019
2
March, 2020
1
January, 2018
Available data
146
bed narrowPeak
104
bam
89
bigWig
73
bigBed narrowPeak
64
xls
62
txt
60
fastq
18
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
310
Homo sapiens
Biosample type
231
tissue
79
cell line
primary cell
Organ
773
liver
642
connective tissue
592
pancreas
487
adipose tissue
353
heart
249
kidney
238
brain
194
blood vessel
194
vasculature
158
bone element
135
artery
117
epithelium
86
limb
61
blood
61
bodily fluid
53
eye
50
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
263
AMP
47
KPMP
Genome assembly (visualization)
162
GRCh38
91
hg19
Lab
142
Katalin Susztak, Upenn
119
AMP-T2D consortium
47
KPMP
2
Bing Ren, UCSD
Audit category:
15
inconsistent ontology term
7
audit script error
1
inconsistent control
assay_title!
DNase-seq
biosample_type!
primary cell
BIOSAMPLE
ASSAY
310 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
snDrop-seq
RNA microarray
STARR-seq
pCHi-C
FAIRE-seq
Hi-C
RRBS
small RNA-seq
tissue
kidney
27
75
64
49
6
1
1
1
metanephros
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
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cell line
GM12878
60
1
RCC 7860 HIF1a re-expression
4
1
RCC 7860 vector
3
1
1
RCC 7860 HIF2a over-expression
3
1
HEK293T
2
+ See 2 more…
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