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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
534
total RNA-seq
205
ChIP-seq
100
ATAC-seq
90
DNase-seq
68
single cell RNA-seq
7
pCHi-C
6
WGBS
6
snATAC-seq
5
RRBS
4
small RNA-seq
3
RNA microarray
3
snDrop-seq
2
Capture-C
2
Hi-C
2
STARR-seq
1
FAIRE-seq
Assay category
100
DNA accessibility
Date released
66
August, 2021
11
May, 2023
10
February, 2023
5
February, 2021
3
October, 2019
1
August, 2017
1
January, 2018
1
November, 2019
1
November, 2020
1
October, 2017
Available data
72
bed narrowPeak
64
xls
9
bigWig
6
bed bed3
5
bam
4
bed bed3+
4
bed bedgraph
4
bigBed narrowPeak
2
fastq
Organism
100
Homo sapiens
Biosample type
81
tissue
17
in vitro differentiated cells
2
primary cell
Organ
152
pancreas
103
epithelium
75
kidney
47
heart
46
blood vessel
46
vasculature
45
artery
28
eye
25
connective tissue
23
liver
12
bone element
12
skeleton
8
limb
6
adipose tissue
4
brain
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
100
AMP
Genome assembly (visualization)
80
GRCh38
25
hg19
Lab
75
Katalin Susztak, Upenn
23
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
BIOSAMPLE
ASSAY
100 results
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Clear Filters
ATAC-seq
tissue
kidney
75
adipose tissue
3
adipose tissue(adipose white tissue)
1
omental fat pad
1
subcutaneous adipose tissue
1
in vitro differentiated cells
adipocyte
8
chondrocyte
5
immature adipocyte
2
osteoblast
1
preadipocyte
1
primary cell
osteoblast
2
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