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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ChIP-seq
18
DNase-seq
16
total RNA-seq
4
RRBS
4
single cell RNA-seq
2
ATAC-seq
2
pCHi-C
1
Hi-C
1
small RNA-seq
Assay category
27
DNA binding
21
Transcription
20
DNA accessibility
4
DNA methylation
1
3D chromatin structure
Target of assay
18
histone
18
histone modification
9
broad histone mark
9
narrow histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
30
June, 2019
15
July, 2019
11
October, 2019
6
November, 2020
5
May, 2019
3
February, 2021
2
April, 2018
2
July, 2018
1
May, 2021
Available data
67
bam
60
bigWig
39
bed narrowPeak
31
bigBed narrowPeak
21
tsv
18
bed bed3+
16
bed broadPeak
16
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
3
fastq
1
bed bed3
1
hdf5
Organism
75
Homo sapiens
Biosample type
846
tissue
97
in vitro differentiated cells
75
primary cell
19
cell line
1
stem cell
Organ
406
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
74
AMP
1
T1D
Genome assembly (visualization)
60
GRCh38
59
hg19
Lab
74
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
21
inconsistent ontology term
BIOSAMPLE
ASSAY
75 results
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ChIP-seq
DNase-seq
total RNA-seq
RRBS
single cell RNA-seq
ATAC-seq
pCHi-C
Hi-C
small RNA-seq
primary cell
epithelial cell of proximal tubule
10
1
1
1
cardiac fibroblast
5
3
1
osteoblast
1
5
2
1
kidney epithelial cell
5
1
1
1
mesenchymal stem cell
7
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