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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
total RNA-seq
184
ChIP-seq
178
ATAC-seq
134
single cell RNA-seq
87
DNase-seq
47
WGBS
9
Hi-C
7
RRBS
6
MeRIP-seq
6
snATAC-seq
3
snDrop-seq
2
Capture-C
2
FAIRE-seq
2
RNA microarray
2
STARR-seq
2
pCHi-C
1
CRISPR genome editing followed by sgRNA sequencing
1
GRO-seq
1
small RNA-seq
Assay category
9
3D chromatin structure
Date released
3
October, 2022
2
July, 2019
1
August, 2021
1
March, 2020
1
November, 2019
1
October, 2019
Available data
7
hic
5
bedpe bed3+
3
cool
2
bed bed3+
2
bigWig
2
hdf5
Organism
9
Homo sapiens
Biosample type
7
primary cell
1
cell line
1
tissue
Organ
9
pancreas
8
epithelium
6
musculature of body
5
blood vessel
5
vasculature
4
limb
4
liver
3
brain
3
heart
2
vein
1
connective tissue
1
kidney
0
embryo
Project
6
AMP
3
HPAP
Genome assembly (visualization)
9
hg19
Lab
5
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
Katalin Susztak, Upenn
Audit category:
4
audit script error
1
inconsistent ontology term
BIOSAMPLE
ASSAY
9 results
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Hi-C
primary cell
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
endothelial cell of hepatic sinusoid
1
pancreatic acinar cell
1
pancreatic alpha cell
1
+ See 1 more…
cell line
EndoC_BH1
1
tissue
kidney
1
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