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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
total RNA-seq
73
single cell RNA-seq
1
small RNA-seq
Assay category
173
DNA accessibility
148
Transcription
74
DNA binding
4
DNA methylation
1
3D chromatin structure
Date released
65
August, 2021
47
September, 2023
9
April, 2020
6
July, 2019
6
October, 2019
5
February, 2021
4
February, 2018
3
May, 2023
2
May, 2021
1
December, 2019
Available data
62
txt
31
tsv
26
bam
26
bigWig
5
csv
4
fastq
Organism
148
Homo sapiens
Biosample type
124
tissue
12
cell line
6
in vitro differentiated cells
6
primary cell
Organ
481
connective tissue
479
pancreas
401
adipose tissue
201
epithelium
193
liver
166
heart
125
kidney
67
blood vessel
67
vasculature
62
bone element
58
artery
24
brain
19
eye
14
embryo
9
lung
9
musculature of body
7
limb
5
nerve
4
skeleton
1
pericardium
1
spinal cord
Project
92
AMP
47
KPMP
9
LungMap
Genome assembly (visualization)
26
GRCh38
26
hg19
Lab
60
Katalin Susztak, Upenn
47
KPMP
32
AMP-T2D consortium
9
Xin Sun, UCSD
Audit category:
5
audit script error
5
inconsistent ontology term
BIOSAMPLE
ASSAY
148 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
tissue
kidney
49
64
lung
9
metanephros
1
1
cell line
H1-hESC
8
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
pancreatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
primary cell
epithelial cell of proximal tubule
1
glomerular endothelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
kidney tubule cell
1
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