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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
12
DNase-seq
6
total RNA-seq
3
RRBS
Assay category
12
DNA accessibility
12
DNA binding
6
Transcription
3
DNA methylation
Target of assay
10
histone
10
histone modification
5
broad histone mark
5
narrow histone mark
control
2
RNA binding protein
2
transcription factor
Date released
12
June, 2019
10
October, 2019
7
July, 2019
4
May, 2019
Available data
28
bam
28
bigWig
22
bed narrowPeak
16
bigBed narrowPeak
10
bed bed3+
10
bed broadPeak
10
bigBed broadPeak
6
tsv
3
bed bedMethyl
3
bigBed bedMethyl
Organism
33
Homo sapiens
Biosample type
293
tissue
33
primary cell
16
cell line
Organ
385
epithelium
334
pancreas
36
connective tissue
33
kidney
33
vasculature
28
blood vessel
20
vein
15
brain
13
liver
12
musculature of body
11
heart
8
blood
8
bodily fluid
4
eye
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
33
AMP
Genome assembly (visualization)
28
GRCh38
25
hg19
Lab
33
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
target.investigated_as!
control
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
33 results
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ChIP-seq
DNase-seq
total RNA-seq
RRBS
primary cell
epithelial cell of proximal tubule
8
1
1
1
kidney epithelial cell
4
1
1
1
kidney tubule cell
3
1
kidney glomerular epithelial cell
2
1
renal cortical epithelial cell
1
1
1
glomerular endothelial cell
1
1
glomerular visceral epithelial cell
2
kidney capillary endothelial cell
1
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