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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
Assay category
120
DNA binding
Target of assay
348
transcription factor
133
histone modification
132
histone
120
control
89
recombinant protein
75
narrow histone mark
61
RNA binding protein
57
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
56
November, 2017
23
May, 2020
13
December, 2017
11
August, 2017
6
October, 2019
5
August, 2021
4
April, 2019
1
June, 2019
1
May, 2019
Available data
113
bam
77
fastq
28
tagAlign
13
bigWig
1
bed bed3+
Organism
120
Homo sapiens
Biosample type
63
cell line
52
tissue
4
primary cell
1
in vitro differentiated cells
Organ
108
liver
53
pancreas
35
connective tissue
31
brain
30
epithelium
24
adipose tissue
22
vasculature
21
blood vessel
20
heart
17
limb
12
kidney
11
nerve
9
artery
8
spleen
7
embryo
6
blood
6
bodily fluid
6
musculature of body
2
vein
1
eye
Project
120
AMP
Genome assembly (visualization)
14
hg19
1
GRCh38
Lab
116
AMP-T2D consortium
4
Bing Ren, UCSD
Audit category:
5
inconsistent ontology term
BIOSAMPLE
ASSAY
120 results
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ChIP-seq
cell line
HepG2
60
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
tissue
liver
43
kidney
6
right lobe of liver
3
primary cell
epithelial cell of proximal tubule
2
hepatocyte
1
kidney epithelial cell
1
in vitro differentiated cells
hepatocyte
1
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