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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
21
total RNA-seq
20
ATAC-seq
4
WGBS
2
pCHi-C
1
DNase-seq
1
Hi-C
1
RRBS
1
single cell RNA-seq
Assay category
73
DNA binding
22
Transcription
21
DNA accessibility
5
DNA methylation
1
3D chromatin structure
Target of assay
45
control
28
histone
28
histone modification
16
narrow histone mark
12
broad histone mark
Date released
40
May, 2022
35
August, 2017
31
May, 2020
12
December, 2017
3
March, 2020
1
February, 2020
1
February, 2021
1
July, 2019
Available data
51
tagAlign
50
bam
28
bed narrowPeak
28
bigWig
21
fastq
3
tsv
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
124
Homo sapiens
Biosample type
133
cell line
124
tissue
3
primary cell
1
in vitro differentiated cells
Organ
134
kidney
123
liver
122
heart
119
pancreas
92
bone element
67
connective tissue
66
adipose tissue
62
brain
53
eye
40
musculature of body
28
blood vessel
28
vasculature
26
limb
20
lung
15
epithelium
12
nerve
11
artery
9
spleen
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
124
AMP
Genome assembly (visualization)
268
hg19
GRCh38
Lab
84
AMP-T2D consortium
40
Karen Mohlke, UNC
assembly!
GRCh38
BIOSAMPLE
ASSAY
124 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
pCHi-C
DNase-seq
Hi-C
RRBS
single cell RNA-seq
tissue
liver
70
20
20
3
1
1
1
1
right lobe of liver
3
1
1
1
sigmoid colon
1
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