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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
36
DNase-seq
ATAC-seq
4
Hi-C
4
total RNA-seq
1
WGBS
1
pCHi-C
Assay category
66
DNA binding
36
DNA accessibility
4
3D chromatin structure
4
Transcription
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
67
October, 2019
32
June, 2019
7
May, 2019
5
July, 2019
February, 2020
1
March, 2020
Available data
106
bam
89
bigWig
84
bed narrowPeak
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
5
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
112
Homo sapiens
Biosample type
112
tissue
Organ
793
pancreas
767
liver
657
connective tissue
483
adipose tissue
421
epithelium
343
heart
279
kidney
270
brain
187
vasculature
181
blood vessel
147
bone element
111
limb
94
artery
93
musculature of body
68
blood
68
bodily fluid
41
nerve
37
embryo
32
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
stomach
1
urinary bladder
Project
112
AMP
Genome assembly (visualization)
88
GRCh38
88
hg19
Lab
112
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
ATAC-seq
month_released!
February, 2020
BIOSAMPLE
ASSAY
112 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
WGBS
pCHi-C
tissue
tibial nerve
35
2
4
tibial artery
23
2
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
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