Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
10
snATAC-seq
9
single cell RNA-seq
3
pCHi-C
2
DNase-seq
2
Hi-C
1
FAIRE-seq
Assay category
21
DNA binding
13
DNA accessibility
9
Transcription
2
3D chromatin structure
Target of assay
19
histone
19
histone modification
10
narrow histone mark
9
broad histone mark
2
control
Date released
25
October, 2019
19
April, 2020
4
March, 2020
Available data
20
bam
15
bigWig
13
bed narrowPeak
13
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
3
tsv
2
bed bed3+
2
hic
1
bedpe bed3+
1
tar
Organism
47
Homo sapiens
Biosample type
26
tissue
22
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
29
AMP
19
LungMap
Genome assembly (visualization)
17
hg19
12
GRCh38
Lab
29
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
1
audit script error
BIOSAMPLE
ASSAY
48 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
snATAC-seq
single cell RNA-seq
pCHi-C
DNase-seq
Hi-C
FAIRE-seq
tissue
lung
10
9
1
islet of Langerhans
4
ovary
1
sigmoid colon
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
Download