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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
111
ATAC-seq
11
snATAC-seq
Assay category
122
DNA accessibility
73
Transcription
57
DNA binding
49
DNA methylation
8
3D chromatin structure
Date released
57
May, 2022
20
November, 2019
16
May, 2021
13
February, 2023
8
January, 2021
4
March, 2019
3
October, 2019
1
August, 2022
Available data
75
bam
74
bed narrowPeak
61
fastq
bigWig
39
zippedFastqFolder
32
bigBed narrowPeak
9
bed broadPeak
7
bed bed3+
7
bigBed broadPeak
2
tsv
Organism
122
Homo sapiens
Biosample type
66
tissue
39
primary cell
17
cell line
Organ
122
pancreas
83
kidney
71
epithelium
43
artery
43
blood vessel
43
heart
43
vasculature
28
eye
16
connective tissue
12
bone element
12
skeleton
10
lung
8
blood
8
bodily fluid
6
limb
3
liver
2
adipose tissue
2
brain
1
musculature of body
1
pituitary gland
1
skin of body
0
large intestine
Project
62
AMP
39
HPAP
21
T1D
Genome assembly (visualization)
40
hg19
22
GRCh38
Lab
40
AMP-T2D consortium
39
Klaus Kaestner, Upenn
39
Kyle Gaulton, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
Audit category:
17
inconsistent ontology term
1
audit script error
files.file_type!
bigWig
BIOSAMPLE
ASSAY
122 results
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Clear Filters
ATAC-seq
snATAC-seq
tissue
islet of Langerhans
55
7
pancreas
4
primary cell
pancreatic alpha cell
22
pancreatic beta cell
13
pancreatic acinar cell
4
cell line
EndoC_BH1
17
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