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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
ChIP-seq
22
ATAC-seq
8
DNase-seq
2
FAIRE-seq
Assay category
54
DNA binding
32
DNA accessibility
Target of assay
44
histone
44
histone modification
27
broad histone mark
17
narrow histone mark
10
transcription factor
6
RNA binding protein
Date released
39
October, 2018
14
September, 2018
13
August, 2017
7
October, 2019
5
September, 2017
4
June, 2019
3
November, 2018
1
May, 2019
Available data
680
bam
614
bigWig
462
fastq
418
tsv
205
bed narrowPeak
86
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
80
Homo sapiens
Biosample type
57
tissue
22
primary cell
7
cell line
Organ
333
liver
127
brain
104
kidney
94
heart
86
pancreas
84
limb
83
vasculature
79
blood vessel
76
epithelium
54
blood
54
bodily fluid
47
musculature of body
28
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
0
large intestine
Project
86
AMP
Genome assembly (visualization)
84
GRCh38
84
hg19
Lab
86
AMP-T2D consortium
Audit category:
inconsistent control read length
1
inconsistent assembly
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
86 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
body of pancreas
25
4
endocrine pancreas
14
pancreas
9
2
1
islet of Langerhans
1
1
primary cell
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
cell line
Panc1
6
1
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