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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
total RNA-seq
45
ChIP-seq
34
ATAC-seq
2
Hi-C
Assay category
46
Transcription
45
DNA binding
34
DNA accessibility
2
3D chromatin structure
Target of assay
42
histone
42
histone modification
23
broad histone mark
19
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
188
August, 2017
157
July, 2018
104
May, 2022
72
September, 2018
61
May, 2021
56
February, 2023
55
November, 2019
53
October, 2018
39
April, 2018
32
February, 2021
19
September, 2020
18
October, 2019
15
March, 2020
11
September, 2017
10
November, 2020
8
January, 2021
7
August, 2020
7
November, 2018
6
July, 2019
5
March, 2019
5
October, 2017
4
August, 2021
4
June, 2019
3
August, 2018
3
October, 2022
2
May, 2019
1
August, 2022
1
February, 2020
1
June, 2018
Available data
125
bam
103
bigWig
77
bed narrowPeak
72
fastq
46
tsv
14
bigBed narrowPeak
2
bedpe bed3+
2
hic
Organism
127
Homo sapiens
Biosample type
72
primary cell
39
tissue
16
cell line
Organ
127
pancreas
77
epithelium
1
adipose tissue
1
connective tissue
0
large intestine
Project
127
AMP
Genome assembly (visualization)
125
hg19
123
GRCh38
Lab
127
AMP-T2D consortium
Audit category:
16
inconsistent ontology term
Audit category:
32
missing controlled_by
BIOSAMPLE
ASSAY
127 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
primary cell
pancreatic ductal cell
4
13
4
pancreatic beta cell
10
4
pancreatic acinar cell
2
8
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
tissue
islet of Langerhans
19
19
1
cell line
EndoC_BH1
1
13
1
1
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