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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
ChIP-seq
36
ATAC-seq
20
total RNA-seq
11
snATAC-seq
4
Hi-C
4
MeRIP-seq
2
FAIRE-seq
2
RRBS
2
pCHi-C
Assay category
49
DNA accessibility
46
DNA binding
20
Transcription
4
3D chromatin structure
2
DNA methylation
Target of assay
33
control
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
2
nucleotide modification
Date released
24
August, 2017
24
May, 2022
18
February, 2023
11
October, 2018
10
October, 2019
8
January, 2021
7
March, 2020
4
July, 2018
4
November, 2020
4
September, 2017
3
March, 2019
2
August, 2021
2
July, 2019
1
August, 2022
1
February, 2020
1
May, 2019
1
May, 2021
1
November, 2018
1
November, 2019
Available data
53
bam
43
fastq
26
bed narrowPeak
10
bigWig
10
tagAlign
7
bed broadPeak
6
txt
5
tsv
3
bedpe bed3+
3
hic
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed narrowPeak
1
bedpe
Organism
126
Homo sapiens
Biosample type
120
tissue
7
cell line
Organ
311
pancreas
260
liver
epithelium
149
kidney
127
heart
118
connective tissue
93
bone element
69
brain
67
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
99
AMP
28
T1D
Genome assembly (visualization)
452
hg19
GRCh38
Lab
67
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
1
audit script error
organ_slims!
epithelium
assembly!
GRCh38
BIOSAMPLE
ASSAY
127 results
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ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
Hi-C
MeRIP-seq
FAIRE-seq
RRBS
pCHi-C
tissue
islet of Langerhans
25
36
18
7
3
4
1
1
pancreas
3
1
4
1
1
1
1
body of pancreas
9
1
endocrine pancreas
2
sigmoid colon
1
cell line
Panc1
7
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