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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
DNase-seq
36
ATAC-seq
26
total RNA-seq
4
Hi-C
4
pCHi-C
1
RRBS
1
WGBS
Assay category
76
DNA accessibility
DNA binding
26
Transcription
4
3D chromatin structure
2
DNA methylation
Date released
36
June, 2019
31
February, 2023
29
October, 2019
6
February, 2021
6
July, 2019
4
February, 2020
Available data
75
bed narrowPeak
53
bam
47
bigWig
40
bed bed3+
40
bed broadPeak
40
bigBed broadPeak
40
bigBed narrowPeak
12
tsv
2
bed bedMethyl
2
bigBed bedMethyl
Organism
112
Homo sapiens
Biosample type
110
tissue
2
primary cell
Organ
728
pancreas
531
connective tissue
418
adipose tissue
395
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
112
AMP
Genome assembly (visualization)
80
hg19
53
GRCh38
Lab
112
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
112 results
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DNase-seq
ATAC-seq
total RNA-seq
Hi-C
pCHi-C
RRBS
WGBS
tissue
retina
3
15
3
islet of Langerhans
1
14
4
muscle of arm
17
muscle of leg
13
1
pigmented layer of retina
12
2
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primary cell
retinal pigment epithelial cell
1
1
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