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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
7
ChIP-seq
ATAC-seq
4
Hi-C
3
total RNA-seq
1
WGBS
Assay category
32
DNA accessibility
7
DNA binding
4
3D chromatin structure
3
Transcription
1
DNA methylation
Target of assay
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
1
control
Date released
October, 2019
32
June, 2019
7
May, 2019
5
July, 2019
3
February, 2020
Available data
40
bam
39
bigWig
38
bed narrowPeak
38
bigBed narrowPeak
32
bed bed3+
32
bed broadPeak
32
bigBed broadPeak
3
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
47
Homo sapiens
Biosample type
47
tissue
Organ
779
pancreas
762
liver
658
connective tissue
485
adipose tissue
387
epithelium
298
heart
249
kidney
197
brain
147
bone element
144
vasculature
138
blood vessel
95
musculature of body
71
artery
68
blood
68
bodily fluid
47
limb
37
embryo
24
spleen
20
lung
18
ureter
13
eye
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
47
AMP
Genome assembly (visualization)
38
GRCh38
38
hg19
Lab
47
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
ATAC-seq
month_released!
October, 2019
BIOSAMPLE
ASSAY
47 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
WGBS
tissue
muscle of leg
13
7
1
muscle of arm
17
gastrocnemius medialis
4
1
forelimb muscle
1
hindlimb muscle
1
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