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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
ChIP-seq
36
DNase-seq
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
51
DNA binding
36
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
narrow histone mark
Date released
54
October, 2019
32
June, 2019
5
July, 2019
5
May, 2019
3
February, 2020
Available data
92
bam
75
bigWig
70
bed narrowPeak
70
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
99
Homo sapiens
Biosample type
99
tissue
Organ
721
pancreas
708
liver
626
connective tissue
473
adipose tissue
372
epithelium
281
heart
264
kidney
165
brain
164
vasculature
159
blood vessel
147
bone element
99
limb
90
artery
82
musculature of body
67
blood
67
bodily fluid
34
nerve
30
eye
29
embryo
22
spleen
20
lung
18
ureter
16
vein
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
99
AMP
Genome assembly (visualization)
75
GRCh38
74
hg19
Lab
99
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
ATAC-seq
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
99 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
27
2
5
tibial artery
19
2
1
muscle of leg
5
13
1
muscle of arm
17
gastrocnemius medialis
1
4
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