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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
35
ATAC-seq
6
single cell RNA-seq
5
total RNA-seq
4
Hi-C
3
WGBS
1
DNase-seq
1
pCHi-C
Assay category
36
DNA accessibility
36
DNA binding
11
Transcription
4
3D chromatin structure
3
DNA methylation
Target of assay
32
control
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
Date released
35
February, 2023
22
October, 2019
12
May, 2019
7
July, 2019
6
August, 2021
5
February, 2020
2
February, 2021
1
June, 2019
1
March, 2020
Available data
39
bam
36
bed narrowPeak
12
tsv
3
bigWig
2
bed bedMethyl
2
bigBed bedMethyl
2
tagAlign
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
91
Homo sapiens
Biosample type
83
tissue
6
primary cell
2
cell line
Organ
288
pancreas
225
kidney
213
epithelium
166
liver
165
heart
122
brain
95
connective tissue
89
bone element
71
blood vessel
71
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
91
AMP
Genome assembly (visualization)
262
GRCh38
hg19
Lab
91
AMP-T2D consortium
assembly!
hg19
BIOSAMPLE
ASSAY
91 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
Hi-C
WGBS
DNase-seq
pCHi-C
tissue
coronary artery
2
35
1
tibial nerve
11
1
aorta
2
4
2
1
tibial artery
5
1
gastrocnemius medialis
1
4
+ See 5 more…
primary cell
endothelial cell of umbilical vein
5
kidney capillary endothelial cell
1
cell line
smooth muscle cell of the coronary artery
2
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