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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
18
ChIP-seq
7
total RNA-seq
4
Hi-C
1
WGBS
1
pCHi-C
Assay category
18
DNA binding
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
17
control
1
histone
1
histone modification
1
narrow histone mark
Date released
84
February, 2021
17
October, 2019
5
July, 2019
4
February, 2023
3
February, 2020
1
May, 2019
1
May, 2021
Available data
88
txt
18
bam
3
tsv
1
bed bedMethyl
1
bigBed bedMethyl
1
bigWig
Organism
115
Homo sapiens
Biosample type
114
tissue
1
primary cell
Organ
288
pancreas
225
kidney
213
epithelium
166
liver
165
heart
122
brain
95
connective tissue
89
bone element
71
blood vessel
71
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
114
AMP
1
T1D
Genome assembly (visualization)
hg19
156
GRCh38
Lab
114
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
assembly!
hg19
BIOSAMPLE
ASSAY
115 results
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RNA microarray
ChIP-seq
total RNA-seq
Hi-C
WGBS
pCHi-C
tissue
bone element
84
tibial nerve
11
1
tibial artery
5
1
gastrocnemius medialis
1
4
muscle of leg
1
1
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primary cell
megakaryocyte
1
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