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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
35
DNase-seq
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
66
DNA binding
35
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
67
October, 2019
31
June, 2019
7
May, 2019
5
July, 2019
3
February, 2020
Available data
105
bam
88
bigWig
83
bed narrowPeak
83
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
113
Homo sapiens
Biosample type
113
tissue
Organ
768
liver
732
pancreas
643
connective tissue
485
adipose tissue
350
epithelium
340
heart
279
brain
256
kidney
189
vasculature
184
blood vessel
113
limb
96
artery
86
musculature of body
68
blood
68
bodily fluid
63
bone element
42
nerve
33
eye
31
embryo
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
Project
113
AMP
Genome assembly (visualization)
87
GRCh38
87
hg19
Lab
113
AMP-T2D consortium
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
113 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
35
2
5
tibial artery
23
2
1
muscle of leg
7
12
1
muscle of arm
17
gastrocnemius medialis
1
4
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