Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ChIP-seq
37
DNase-seq
8
ATAC-seq
7
total RNA-seq
6
Hi-C
1
FAIRE-seq
1
WGBS
Assay category
83
DNA binding
46
DNA accessibility
7
Transcription
6
3D chromatin structure
1
DNA methylation
Target of assay
64
histone
64
histone modification
43
broad histone mark
21
narrow histone mark
19
control
Date released
90
October, 2019
31
June, 2019
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
1
March, 2020
Available data
133
bam
105
bigWig
104
bed narrowPeak
96
bigBed narrowPeak
39
bed broadPeak
39
bigBed broadPeak
37
bed bed3+
7
tsv
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
143
Homo sapiens
Biosample type
121
tissue
22
primary cell
Organ
865
pancreas
790
liver
665
connective tissue
490
adipose tissue
433
epithelium
387
heart
kidney
283
brain
235
vasculature
230
blood vessel
141
artery
121
limb
87
musculature of body
75
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
31
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
143
AMP
Genome assembly (visualization)
112
hg19
107
GRCh38
Lab
143
AMP-T2D consortium
Audit category:
1
audit script error
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
organ_slims!
kidney
BIOSAMPLE
ASSAY
143 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
FAIRE-seq
WGBS
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
muscle of leg
7
12
1
muscle of arm
17
gastrocnemius medialis
1
4
+ See 9 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
See all biosamples
Download