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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ChIP-seq
35
DNase-seq
7
total RNA-seq
4
Hi-C
3
ATAC-seq
1
WGBS
Assay category
67
DNA binding
38
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
50
histone
50
histone modification
34
broad histone mark
17
control
16
narrow histone mark
Date released
71
October, 2019
31
June, 2019
7
May, 2019
5
July, 2019
3
February, 2020
Available data
108
bam
91
bigWig
86
bed narrowPeak
83
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign
Organism
117
Homo sapiens
Biosample type
117
tissue
Organ
865
pancreas
790
liver
665
connective tissue
490
adipose tissue
433
epithelium
387
heart
331
kidney
283
brain
235
vasculature
230
blood vessel
141
artery
121
limb
87
musculature of body
75
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
31
embryo
25
spleen
22
vein
20
lung
18
ureter
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
117
AMP
Genome assembly (visualization)
90
GRCh38
90
hg19
Lab
117
AMP-T2D consortium
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
organ_slims!
skeleton
BIOSAMPLE
ASSAY
117 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
ATAC-seq
WGBS
tissue
tibial nerve
35
2
5
1
tibial artery
23
2
1
1
muscle of leg
7
12
1
muscle of arm
17
gastrocnemius medialis
1
4
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