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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
ChIP-seq
35
DNase-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
51
DNA binding
43
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
narrow histone mark
Date released
56
October, 2019
31
June, 2019
6
February, 2021
5
July, 2019
5
May, 2019
3
February, 2020
Available data
99
bam
77
bed narrowPeak
76
bigWig
69
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
106
Homo sapiens
Biosample type
106
tissue
Organ
798
pancreas
730
liver
636
connective tissue
478
adipose tissue
394
epithelium
349
heart
318
kidney
209
vasculature
205
blood vessel
168
brain
135
artery
106
limb
77
musculature of body
75
bone element
68
blood
68
bodily fluid
58
eye
35
nerve
25
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
Project
106
AMP
Genome assembly (visualization)
82
GRCh38
81
hg19
Lab
106
AMP-T2D consortium
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
106 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
27
2
1
5
tibial artery
19
2
1
1
muscle of leg
5
12
1
muscle of arm
17
gastrocnemius medialis
1
4
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