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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
66
DNA binding
8
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
65
October, 2019
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
Available data
114
bam
92
bed narrowPeak
91
bigWig
84
bigBed narrowPeak
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
86
Homo sapiens
Biosample type
86
tissue
Organ
541
connective tissue
482
adipose tissue
478
pancreas
355
liver
246
heart
238
brain
231
kidney
158
bone element
128
blood vessel
128
vasculature
86
limb
69
artery
53
eye
49
musculature of body
41
nerve
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
86
AMP
Genome assembly (visualization)
60
GRCh38
60
hg19
Lab
86
AMP-T2D consortium
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
86 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
35
1
5
tibial artery
23
1
1
muscle of leg
7
1
gastrocnemius medialis
1
4
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
islet of Langerhans
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
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