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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
36
DNase-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
Assay category
44
DNA accessibility
7
Transcription
4
3D chromatin structure
Date released
32
June, 2019
10
October, 2019
6
February, 2021
4
July, 2019
3
February, 2020
Available data
49
bam
44
bed narrowPeak
43
bigWig
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
36
bigBed narrowPeak
7
tsv
bed bedMethyl
1
bigBed bedMethyl
Organism
55
Homo sapiens
Biosample type
55
tissue
Organ
722
pancreas
528
connective tissue
416
adipose tissue
389
epithelium
298
kidney
251
heart
236
liver
159
bone element
132
vasculature
130
blood vessel
107
artery
66
brain
55
eye
55
limb
53
musculature of body
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
vein
3
spleen
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
55
AMP
Genome assembly (visualization)
48
GRCh38
48
hg19
Lab
55
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bed bedMethyl
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
55 results
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DNase-seq
ATAC-seq
total RNA-seq
Hi-C
tissue
muscle of arm
17
muscle of leg
13
tibial nerve
2
1
5
gastrocnemius medialis
1
4
tibial artery
2
1
1
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