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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
8
ATAC-seq
4
Hi-C
4
total RNA-seq
1
WGBS
Assay category
66
DNA binding
8
DNA accessibility
4
3D chromatin structure
4
Transcription
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
65
October, 2019
7
May, 2019
6
February, 2021
5
July, 2019
February, 2020
Available data
114
bam
92
bed narrowPeak
91
bigWig
84
bigBed narrowPeak
36
bed bed3+
bed broadPeak
36
bigBed broadPeak
4
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
83
Homo sapiens
Biosample type
83
tissue
Organ
924
pancreas
727
liver
672
connective tissue
502
epithelium
486
adipose tissue
320
heart
276
kidney
227
brain
216
vasculature
214
blood vessel
159
bone element
135
artery
83
limb
69
blood
69
bodily fluid
56
eye
48
musculature of body
40
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
83
AMP
Genome assembly (visualization)
60
GRCh38
60
hg19
Lab
83
AMP-T2D consortium
files.file_type!
bed broadPeak
month_released!
February, 2020
BIOSAMPLE
ASSAY
83 results
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ChIP-seq
ATAC-seq
Hi-C
total RNA-seq
WGBS
tissue
tibial nerve
35
1
4
tibial artery
23
1
muscle of leg
7
1
gastrocnemius medialis
4
distal epiphysis of femur
1
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