Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
24
total RNA-seq
7
Hi-C
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
WGBS
Assay category
66
DNA binding
31
Transcription
7
3D chromatin structure
4
DNA accessibility
3
DNA methylation
Target of assay
48
control
21
histone
21
histone modification
12
narrow histone mark
9
broad histone mark
Date released
32
October, 2019
27
November, 2017
22
July, 2019
15
February, 2020
10
October, 2017
4
May, 2019
2
March, 2020
1
February, 2023
Available data
357
bam
313
bigWig
bed narrowPeak
211
bigBed narrowPeak
118
tagAlign
83
bed broadPeak
74
bigBed broadPeak
71
bed bed3+
33
tsv
21
fastq
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
113
Homo sapiens
Biosample type
103
tissue
10
primary cell
Organ
732
pancreas
609
connective tissue
478
adipose tissue
373
epithelium
350
liver
202
heart
171
kidney
151
bone element
103
vasculature
101
blood vessel
83
brain
67
artery
36
musculature of body
30
limb
28
eye
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
113
AMP
Genome assembly (visualization)
27
hg19
21
GRCh38
Lab
113
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
113 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
small RNA-seq
single cell RNA-seq
RRBS
pCHi-C
WGBS
tissue
tibial nerve
11
5
brain
9
1
1
1
cingulate gyrus
7
layer of hippocampus
6
tibial artery
5
1
+ See 28 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
See all biosamples
Download