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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
284
ChIP-seq
68
DNase-seq
24
total RNA-seq
12
ATAC-seq
7
Hi-C
4
small RNA-seq
3
single cell RNA-seq
2
pCHi-C
1
FAIRE-seq
Assay category
284
DNA binding
81
DNA accessibility
31
Transcription
7
3D chromatin structure
Target of assay
236
histone
236
histone modification
132
narrow histone mark
104
broad histone mark
48
control
3
RNA binding protein
3
transcription factor
Date released
155
October, 2019
91
November, 2017
62
June, 2019
35
May, 2019
20
July, 2019
16
October, 2017
15
February, 2020
6
February, 2021
2
March, 2020
2
November, 2018
1
February, 2023
Available data
357
bam
313
bigWig
295
bed narrowPeak
211
bigBed narrowPeak
118
tagAlign
83
bed broadPeak
74
bigBed broadPeak
71
bed bed3+
33
tsv
21
fastq
3
bed bedMethyl
bigBed bedMethyl
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
405
Homo sapiens
Biosample type
385
tissue
20
primary cell
Organ
940
pancreas
788
liver
681
connective tissue
518
epithelium
489
adipose tissue
350
kidney
345
heart
284
brain
234
vasculature
229
blood vessel
159
bone element
141
artery
121
limb
92
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
405
AMP
Genome assembly (visualization)
312
GRCh38
258
hg19
Lab
405
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
4
missing controlled_by
files.file_type!
bigBed bedMethyl
BIOSAMPLE
ASSAY
405 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
Hi-C
small RNA-seq
single cell RNA-seq
pCHi-C
FAIRE-seq
tissue
tibial nerve
35
2
5
1
brain
20
14
1
1
tibial artery
23
2
1
1
layer of hippocampus
23
muscle of leg
7
13
+ See 90 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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