Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
405
total RNA-seq
139
ChIP-seq
14
ATAC-seq
7
WGBS
4
Hi-C
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
408
Transcription
139
DNA binding
14
DNA accessibility
7
DNA methylation
4
3D chromatin structure
Target of assay
81
histone
81
histone modification
54
broad histone mark
41
control
27
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
392
February, 2021
66
October, 2019
57
August, 2017
23
October, 2018
17
July, 2019
7
May, 2019
5
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
Available data
556
bam
516
bigWig
408
tsv
105
bed narrowPeak
94
bigBed narrowPeak
44
fastq
42
bed bed3+
39
bed broadPeak
bigBed broadPeak
8
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
Organism
574
Homo sapiens
Biosample type
572
tissue
2
primary cell
1
in vitro differentiated cells
Organ
939
pancreas
728
liver
675
connective tissue
502
epithelium
489
adipose tissue
323
heart
276
kidney
248
brain
219
vasculature
217
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
63
musculature of body
57
eye
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
575
AMP
Genome assembly (visualization)
484
hg19
482
GRCh38
Lab
575
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
575 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
Hi-C
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
3
1
tibial nerve
5
35
1
subcutaneous abdominal adipose tissue
36
3
tibial artery
1
23
1
subcutaneous adipose tissue
7
12
1
1
1
+ See 13 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
See all biosamples
Download