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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
480
ChIP-seq
163
total RNA-seq
41
DNase-seq
23
ATAC-seq
3
small RNA-seq
2
WGBS
1
Hi-C
Assay category
480
DNA binding
166
Transcription
64
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
333
transcription factor
131
histone modification
130
histone
81
recombinant protein
66
narrow histone mark
64
broad histone mark
56
RNA binding protein
23
chromatin remodeller
13
control
2
other context
2
other post-translational modification
Date released
268
November, 2017
170
May, 2020
58
October, 2019
52
November, 2018
50
December, 2017
34
June, 2019
20
May, 2022
18
August, 2017
17
August, 2021
9
July, 2019
6
May, 2019
5
December, 2019
5
January, 2019
1
March, 2020
Available data
795
bam
713
bigWig
533
bed narrowPeak
465
fastq
442
bigBed narrowPeak
181
tsv
99
bed broadPeak
99
bigBed broadPeak
86
tagAlign
49
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
713
Homo sapiens
Biosample type
356
tissue
332
cell line
14
in vitro differentiated cells
11
primary cell
Organ
623
pancreas
622
liver
570
connective tissue
425
adipose tissue
301
epithelium
222
brain
184
heart
155
vasculature
150
blood vessel
131
kidney
91
limb
85
artery
68
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
713
AMP
Genome assembly (visualization)
707
hg19
618
GRCh38
Lab
679
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
12
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
713 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
Hi-C
tissue
liver
82
147
2
20
1
tibial nerve
24
4
2
1
tibial artery
18
2
1
muscle of leg
6
13
1
muscle of arm
17
+ See 3 more…
cell line
HepG2
326
5
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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