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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
66
ChIP-seq
66
total RNA-seq
36
DNase-seq
14
ATAC-seq
4
Hi-C
1
WGBS
1
pCHi-C
Assay category
66
DNA binding
66
Transcription
50
DNA accessibility
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
150
February, 2021
69
October, 2019
32
June, 2019
8
February, 2023
7
May, 2019
5
July, 2019
February, 2020
1
May, 2021
Available data
174
bam
149
bigWig
94
bed narrowPeak
88
txt
84
bigBed narrowPeak
62
tsv
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
4
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
272
Homo sapiens
Biosample type
271
tissue
1
primary cell
Organ
945
pancreas
790
liver
682
connective tissue
524
epithelium
489
adipose tissue
354
kidney
350
heart
274
brain
233
vasculature
227
blood vessel
159
bone element
139
artery
119
limb
94
musculature of body
69
blood
69
bodily fluid
60
eye
42
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
271
AMP
1
T1D
Genome assembly (visualization)
160
hg19
156
GRCh38
Lab
271
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
85
inconsistent ontology term
month_released!
February, 2020
BIOSAMPLE
ASSAY
272 results
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RNA microarray
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
tissue
bone element
84
bone tissue
58
tibial nerve
35
4
2
1
tibial artery
23
2
1
muscle of leg
7
13
1
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primary cell
megakaryocyte
1
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