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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
59
DNA binding
8
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
43
histone
43
histone modification
30
broad histone mark
16
control
13
narrow histone mark
Date released
65
October, 2019
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
Available data
107
bam
86
bed narrowPeak
85
bigWig
78
bigBed narrowPeak
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
79
Homo sapiens
Biosample type
79
tissue
Organ
915
pancreas
778
liver
657
connective tissue
498
epithelium
485
adipose tissue
302
heart
271
kidney
223
brain
173
vasculature
169
blood vessel
159
bone element
132
artery
79
limb
69
blood
69
bodily fluid
57
eye
55
musculature of body
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
79
AMP
Genome assembly (visualization)
55
GRCh38
54
hg19
Lab
79
AMP-T2D consortium
month_released!
May, 2019
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
79 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
35
1
5
tibial artery
23
1
1
gastrocnemius medialis
1
4
distal epiphysis of femur
1
distal epiphysis of humerus
1
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