Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
40
DNase-seq
36
ATAC-seq
26
total RNA-seq
4
Hi-C
4
pCHi-C
1
RRBS
1
WGBS
Assay category
76
DNA accessibility
64
DNA binding
26
Transcription
4
3D chromatin structure
2
DNA methylation
Target of assay
46
histone
46
histone modification
30
broad histone mark
17
control
16
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
90
October, 2019
39
June, 2019
31
February, 2023
May, 2019
6
February, 2021
6
July, 2019
4
February, 2020
Available data
119
bed narrowPeak
114
bam
91
bigWig
84
bigBed narrowPeak
40
bed bed3+
40
bed broadPeak
40
bigBed broadPeak
12
tsv
2
bed bedMethyl
2
bigBed bedMethyl
Organism
176
Homo sapiens
Biosample type
171
tissue
5
primary cell
Organ
944
pancreas
791
liver
684
connective tissue
519
epithelium
491
adipose tissue
349
kidney
332
heart
258
brain
186
vasculature
180
blood vessel
159
bone element
136
artery
115
limb
89
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
176
AMP
Genome assembly (visualization)
124
hg19
97
GRCh38
Lab
176
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
May, 2019
BIOSAMPLE
ASSAY
176 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
pCHi-C
RRBS
WGBS
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
islet of Langerhans
3
1
14
4
retina
3
15
3
muscle of arm
17
+ See 11 more…
primary cell
retinal pigment epithelial cell
3
1
1
See all biosamples
Download