Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
36
DNase-seq
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
66
DNA binding
36
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
67
October, 2019
32
June, 2019
7
May, 2019
5
July, 2019
3
February, 2020
Available data
106
bam
89
bigWig
84
bed narrowPeak
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
114
Homo sapiens
Biosample type
114
tissue
Organ
794
pancreas
768
liver
659
connective tissue
485
adipose tissue
421
epithelium
306
heart
282
brain
279
kidney
190
vasculature
184
blood vessel
147
bone element
114
limb
96
artery
95
musculature of body
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
114
AMP
Genome assembly (visualization)
88
GRCh38
88
hg19
Lab
114
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
blood
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
114 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
35
2
5
tibial artery
23
2
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
+ See 3 more…
See all biosamples
Download