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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
7
total RNA-seq
4
Hi-C
2
ATAC-seq
1
WGBS
Assay category
18
DNA binding
7
Transcription
4
3D chromatin structure
2
DNA accessibility
1
DNA methylation
Target of assay
17
control
1
histone
1
histone modification
1
narrow histone mark
Date released
23
October, 2019
5
July, 2019
3
February, 2020
1
May, 2019
Available data
108
bam
91
bigWig
86
bed narrowPeak
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
32
Homo sapiens
Biosample type
32
tissue
Organ
855
pancreas
656
connective tissue
481
adipose tissue
448
epithelium
433
liver
299
heart
250
kidney
bone element
159
brain
153
vasculature
151
blood vessel
116
artery
55
eye
49
musculature of body
38
limb
37
embryo
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
32
AMP
Genome assembly (visualization)
7
GRCh38
6
hg19
Lab
32
AMP-T2D consortium
organ_slims!
bone element
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
32 results
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Clear Filters
ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
WGBS
tissue
tibial nerve
11
5
1
tibial artery
5
1
1
gastrocnemius medialis
1
4
muscle of leg
1
1
islet of Langerhans
1
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