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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
7
total RNA-seq
4
DNase-seq
4
Hi-C
2
ATAC-seq
1
WGBS
Assay category
66
DNA binding
7
Transcription
6
DNA accessibility
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
69
October, 2019
June, 2019
7
May, 2019
5
July, 2019
3
February, 2020
Available data
76
bam
59
bigWig
54
bed narrowPeak
52
bigBed narrowPeak
7
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
84
Homo sapiens
Biosample type
84
tissue
Organ
942
pancreas
789
liver
666
connective tissue
504
epithelium
490
adipose tissue
318
heart
273
kidney
256
brain
229
vasculature
225
blood vessel
bone element
139
artery
90
limb
69
blood
69
bodily fluid
54
eye
53
musculature of body
43
nerve
37
embryo
25
spleen
22
vein
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
84
AMP
Genome assembly (visualization)
58
GRCh38
58
hg19
Lab
84
AMP-T2D consortium
organ_slims!
bone element
month_released!
June, 2019
BIOSAMPLE
ASSAY
84 results
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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
ATAC-seq
WGBS
tissue
tibial nerve
35
5
2
1
tibial artery
23
1
2
1
muscle of leg
7
1
gastrocnemius medialis
1
4
islet of Langerhans
1
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