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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
DNase-seq
32
ChIP-seq
7
total RNA-seq
4
Hi-C
2
ATAC-seq
1
WGBS
Assay category
38
DNA accessibility
32
DNA binding
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
broad histone mark
17
control
15
narrow histone mark
Date released
39
October, 2019
32
June, 2019
5
July, 2019
3
February, 2020
3
May, 2019
Available data
74
bam
57
bigWig
52
bed narrowPeak
50
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
82
Homo sapiens
Biosample type
82
tissue
Organ
868
pancreas
749
liver
640
connective tissue
480
epithelium
471
adipose tissue
339
kidney
316
heart
216
brain
191
vasculature
185
blood vessel
bone element
127
artery
88
limb
76
musculature of body
69
blood
69
bodily fluid
61
eye
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
82
AMP
Genome assembly (visualization)
56
GRCh38
56
hg19
Lab
82
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
bone element
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
82 results
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DNase-seq
ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
WGBS
tissue
tibial nerve
2
19
5
1
muscle of arm
17
muscle of leg
13
3
1
tibial artery
2
9
1
1
gastrocnemius medialis
1
4
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