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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
36
DNase-seq
21
total RNA-seq
ATAC-seq
4
Hi-C
1
GRO-seq
1
WGBS
Assay category
88
DNA binding
36
DNA accessibility
21
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
61
histone
61
histone modification
38
broad histone mark
24
control
23
narrow histone mark
3
transcription factor
Date released
67
October, 2019
32
June, 2019
13
December, 2017
13
February, 2018
8
August, 2021
7
May, 2019
5
July, 2019
3
February, 2020
2
May, 2021
1
January, 2018
Available data
142
bam
118
bigWig
98
bed narrowPeak
84
bigBed narrowPeak
39
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
27
fastq
21
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
151
Homo sapiens
Biosample type
114
tissue
29
in vitro differentiated cells
8
cell line
Organ
794
pancreas
768
liver
connective tissue
485
adipose tissue
421
epithelium
346
heart
282
brain
279
kidney
190
vasculature
184
blood vessel
147
bone element
114
limb
96
artery
95
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
151
AMP
Genome assembly (visualization)
117
GRCh38
117
hg19
1
hg18
Lab
151
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
organ_slims!
connective tissue
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
151 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
GRO-seq
WGBS
tissue
tibial nerve
35
2
5
tibial artery
23
2
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
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in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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