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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
36
DNase-seq
total RNA-seq
8
ATAC-seq
4
Hi-C
1
GRO-seq
1
WGBS
Assay category
88
DNA binding
44
DNA accessibility
4
3D chromatin structure
1
DNA methylation
Target of assay
61
histone
61
histone modification
38
broad histone mark
24
control
23
narrow histone mark
3
transcription factor
Date released
65
October, 2019
32
June, 2019
13
December, 2017
9
February, 2018
7
May, 2019
6
February, 2021
5
July, 2019
1
January, 2018
Available data
132
bam
106
bed narrowPeak
102
bigWig
84
bigBed narrowPeak
39
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
23
fastq
1
bed bedMethyl
1
bigBed bedMethyl
Organism
138
Homo sapiens
Biosample type
115
tissue
23
in vitro differentiated cells
Organ
602
liver
543
pancreas
393
epithelium
321
heart
294
kidney
269
brain
connective tissue
175
vasculature
169
blood vessel
115
limb
97
bone element
93
adipose tissue
90
musculature of body
85
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
138
AMP
Genome assembly (visualization)
107
GRCh38
107
hg19
1
hg18
Lab
138
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
organ_slims!
connective tissue
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
138 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
GRO-seq
WGBS
tissue
tibial nerve
35
2
1
tibial artery
23
2
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
+ See 9 more…
in vitro differentiated cells
pancreatic endoderm
18
1
Hepatic endoderm
4
See all biosamples
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