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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
36
DNase-seq
11
total RNA-seq
9
ATAC-seq
6
Hi-C
4
RRBS
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
small RNA-seq
1
snATAC-seq
Assay category
88
DNA binding
46
DNA accessibility
13
Transcription
6
3D chromatin structure
5
DNA methylation
Target of assay
68
histone
68
histone modification
46
broad histone mark
22
narrow histone mark
20
control
Date released
69
October, 2019
32
June, 2019
26
August, 2017
7
July, 2019
7
May, 2019
6
February, 2021
5
March, 2020
4
February, 2020
2
May, 2022
1
January, 2018
Available data
118
bam
109
bigWig
105
bed narrowPeak
84
bigBed narrowPeak
49
bed broadPeak
37
bed bed3+
36
bigBed broadPeak
15
tagAlign
13
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
159
Homo sapiens
Biosample type
159
tissue
primary cell
Organ
777
liver
connective tissue
600
pancreas
489
adipose tissue
380
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
159
AMP
Genome assembly (visualization)
119
hg19
100
GRCh38
Lab
159
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
organ_slims!
connective tissue
biosample_type!
primary cell
BIOSAMPLE
ASSAY
159 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
Hi-C
RRBS
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
snATAC-seq
tissue
tibial nerve
35
2
5
1
skeletal muscle tissue
22
1
1
4
1
1
1
tibial artery
23
2
1
1
muscle of leg
7
13
1
muscle of arm
17
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