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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
ChIP-seq
7
ATAC-seq
4
Hi-C
2
total RNA-seq
1
WGBS
Assay category
31
DNA binding
7
DNA accessibility
4
3D chromatin structure
2
Transcription
1
DNA methylation
Target of assay
25
histone
25
histone modification
18
broad histone mark
7
narrow histone mark
6
control
Date released
25
October, 2019
7
May, 2019
6
February, 2021
5
July, 2019
2
February, 2020
Available data
72
bam
65
bed narrowPeak
60
bigWig
58
bigBed narrowPeak
34
bed bed3+
bed broadPeak
34
bigBed broadPeak
2
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
45
Homo sapiens
Biosample type
45
tissue
Organ
925
pancreas
728
liver
674
connective tissue
502
epithelium
488
adipose tissue
323
heart
276
kidney
239
brain
219
vasculature
217
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
57
eye
50
musculature of body
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
45
AMP
Genome assembly (visualization)
31
GRCh38
31
hg19
Lab
45
AMP-T2D consortium
organ_slims!
nerve
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
45 results
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ChIP-seq
ATAC-seq
Hi-C
total RNA-seq
WGBS
tissue
tibial artery
23
1
1
muscle of leg
7
1
gastrocnemius medialis
4
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
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