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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
5
total RNA-seq
4
Hi-C
4
WGBS
3
ATAC-seq
2
pCHi-C
1
RNA microarray
Assay category
74
DNA binding
5
Transcription
4
3D chromatin structure
4
DNA methylation
3
DNA accessibility
Target of assay
41
control
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
Date released
41
August, 2017
18
October, 2018
18
October, 2019
5
February, 2020
4
July, 2019
2
May, 2019
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
Available data
37
bam
21
fastq
8
tagAlign
6
tsv
4
bigWig
3
bed narrowPeak
2
bigBed narrowPeak
1
bed broadPeak
1
bedpe bed3+
Organism
92
Homo sapiens
Biosample type
92
tissue
1
in vitro differentiated cells
Organ
311
pancreas
260
liver
230
epithelium
149
kidney
127
heart
118
connective tissue
93
bone element
69
brain
67
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
93
AMP
Genome assembly (visualization)
522
hg19
GRCh38
Lab
93
AMP-T2D consortium
assembly!
GRCh38
BIOSAMPLE
ASSAY
93 results
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ChIP-seq
total RNA-seq
Hi-C
WGBS
ATAC-seq
pCHi-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
10
1
1
tibial nerve
11
1
omental fat pad
8
1
adipose tissue
1
1
3
1
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in vitro differentiated cells
white fat cell
1
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