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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
404
total RNA-seq
132
ChIP-seq
14
ATAC-seq
6
DNase-seq
6
WGBS
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
407
Transcription
132
DNA binding
20
DNA accessibility
6
DNA methylation
Target of assay
75
histone
75
histone modification
50
broad histone mark
40
control
25
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
392
February, 2021
70
October, 2019
57
August, 2017
23
October, 2018
12
July, 2019
4
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
516
bam
477
bigWig
407
tsv
67
bed narrowPeak
56
bigBed narrowPeak
44
fastq
10
bed bed3+
8
tagAlign
7
bed broadPeak
6
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
Organism
567
Homo sapiens
Biosample type
565
tissue
2
primary cell
1
in vitro differentiated cells
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
568
AMP
Genome assembly (visualization)
484
hg19
482
GRCh38
Lab
568
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
568 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
3
1
tibial nerve
5
35
1
2
subcutaneous abdominal adipose tissue
36
3
tibial artery
1
23
1
2
subcutaneous adipose tissue
7
12
1
1
1
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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