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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ChIP-seq
62
total RNA-seq
ATAC-seq
38
DNase-seq
4
Hi-C
2
single cell RNA-seq
1
WGBS
Assay category
77
DNA binding
64
Transcription
38
DNA accessibility
4
3D chromatin structure
1
DNA methylation
Target of assay
51
histone
51
histone modification
34
broad histone mark
21
control
17
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
67
October, 2019
58
February, 2021
34
June, 2019
12
May, 2019
7
July, 2019
4
February, 2020
2
August, 2021
Available data
173
bam
152
bigWig
93
bed narrowPeak
89
bigBed narrowPeak
64
tsv
38
bed bed3+
38
bed broadPeak
38
bigBed broadPeak
6
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
Organism
184
Homo sapiens
Biosample type
124
tissue
58
cell line
2
primary cell
Organ
794
pancreas
768
liver
659
connective tissue
485
adipose tissue
421
epithelium
306
heart
282
brain
279
kidney
190
vasculature
184
blood vessel
147
bone element
114
limb
96
artery
95
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
184
AMP
Genome assembly (visualization)
151
GRCh38
151
hg19
Lab
184
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
184 results
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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
single cell RNA-seq
WGBS
tissue
tibial nerve
35
5
2
tibial artery
23
1
2
muscle of leg
7
13
1
muscle of arm
17
coronary artery
5
1
2
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cell line
smooth muscle cell of the coronary artery
6
52
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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