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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ChIP-seq
60
total RNA-seq
52
ATAC-seq
38
DNase-seq
4
Hi-C
2
single cell RNA-seq
1
WGBS
Assay category
90
DNA accessibility
77
DNA binding
62
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
51
histone
51
histone modification
34
broad histone mark
21
control
17
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
72
February, 2021
69
October, 2019
35
February, 2023
34
June, 2019
12
May, 2019
6
July, 2019
4
February, 2020
2
August, 2021
Available data
188
bam
153
bigWig
145
bed narrowPeak
89
bigBed narrowPeak
62
tsv
38
bed bed3+
38
bed broadPeak
38
bigBed broadPeak
6
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
Organism
234
Homo sapiens
Biosample type
168
tissue
66
cell line
primary cell
Organ
777
liver
645
connective tissue
600
pancreas
489
adipose tissue
340
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
234
AMP
Genome assembly (visualization)
201
GRCh38
166
hg19
Lab
234
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
biosample_type!
primary cell
BIOSAMPLE
ASSAY
234 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
single cell RNA-seq
WGBS
tissue
coronary artery
5
1
36
2
tibial nerve
35
5
1
2
tibial artery
23
1
1
2
muscle of leg
7
13
1
muscle of arm
17
+ See 11 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
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