Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
126
ChIP-seq
36
DNase-seq
9
ATAC-seq
8
snATAC-seq
4
Hi-C
1
WGBS
Assay category
126
DNA binding
53
DNA accessibility
4
3D chromatin structure
1
DNA methylation
Target of assay
51
transcription factor
50
histone
50
histone modification
34
broad histone mark
23
control
16
narrow histone mark
10
RNA binding protein
10
chromatin remodeller
Date released
65
October, 2019
32
June, 2019
27
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
7
May, 2019
6
February, 2021
5
July, 2019
1
January, 2018
Available data
174
bam
146
bed narrowPeak
146
bigWig
138
bigBed narrowPeak
60
fastq
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
184
Homo sapiens
Biosample type
115
tissue
61
cell line
8
primary cell
Organ
617
liver
529
pancreas
368
epithelium
330
kidney
260
brain
225
heart
connective tissue
168
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
176
AMP
8
T1D
Genome assembly (visualization)
147
hg19
146
GRCh38
Lab
176
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
1
inconsistent ontology term
organ_slims!
connective tissue
files.file_type!
tsv
BIOSAMPLE
ASSAY
184 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
snATAC-seq
Hi-C
WGBS
tissue
tibial nerve
35
2
1
tibial artery
23
2
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
+ See 9 more…
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
See all biosamples
Download