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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
126
ChIP-seq
9
ATAC-seq
8
snATAC-seq
7
total RNA-seq
4
DNase-seq
4
Hi-C
1
WGBS
Assay category
126
DNA binding
21
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
51
transcription factor
50
histone
50
histone modification
34
broad histone mark
23
control
16
narrow histone mark
10
RNA binding protein
10
chromatin remodeller
Date released
69
October, 2019
June, 2019
27
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
1
January, 2018
Available data
142
bam
114
bed narrowPeak
114
bigWig
106
bigBed narrowPeak
60
fastq
7
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
159
Homo sapiens
Biosample type
90
tissue
61
cell line
8
primary cell
Organ
942
pancreas
789
liver
connective tissue
504
epithelium
490
adipose tissue
358
heart
273
kidney
256
brain
229
vasculature
225
blood vessel
159
bone element
139
artery
90
limb
69
blood
69
bodily fluid
54
eye
53
musculature of body
43
nerve
37
embryo
25
spleen
22
vein
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
151
AMP
8
T1D
Genome assembly (visualization)
119
hg19
118
GRCh38
Lab
151
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
organ_slims!
connective tissue
month_released!
June, 2019
BIOSAMPLE
ASSAY
159 results
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ChIP-seq
ATAC-seq
snATAC-seq
total RNA-seq
DNase-seq
Hi-C
WGBS
tissue
tibial nerve
35
1
5
2
tibial artery
23
1
1
2
muscle of leg
7
1
gastrocnemius medialis
1
4
distal epiphysis of femur
1
+ See 6 more…
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
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