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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
ChIP-seq
36
DNase-seq
8
ATAC-seq
4
total RNA-seq
1
WGBS
Assay category
101
DNA binding
44
DNA accessibility
4
Transcription
1
DNA methylation
Target of assay
51
transcription factor
48
histone
48
histone modification
34
broad histone mark
14
narrow histone mark
10
RNA binding protein
10
chromatin remodeller
Date released
52
October, 2019
32
June, 2019
27
December, 2018
15
January, 2019
12
November, 2018
6
February, 2021
5
May, 2019
1
July, 2019
Available data
150
bam
145
bed narrowPeak
144
bigWig
137
bigBed narrowPeak
54
fastq
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
4
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
150
Homo sapiens
Biosample type
96
tissue
54
cell line
Organ
635
pancreas
566
connective tissue
531
liver
424
adipose tissue
294
epithelium
266
heart
217
brain
205
kidney
191
vasculature
187
blood vessel
128
artery
96
limb
66
bone element
54
blood
54
bodily fluid
53
musculature of body
31
nerve
29
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
150
AMP
Genome assembly (visualization)
151
hg19
150
GRCh38
Lab
150
AMP-T2D consortium
Audit category:
1
inconsistent control
1
inconsistent ontology term
organ_slims!
ovary
BIOSAMPLE
ASSAY
150 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
WGBS
tissue
tibial nerve
24
2
1
4
tibial artery
18
2
1
muscle of leg
5
13
1
muscle of arm
17
distal epiphysis of femur
1
+ See 7 more…
cell line
GM12878
54
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